<?xml version="1.0" encoding="utf-8"?><feed xmlns="http://www.w3.org/2005/Atom" ><generator uri="https://jekyllrb.com/" version="3.10.0">Jekyll</generator><link href="https://coffee19850519.github.io/feed.xml" rel="self" type="application/atom+xml" /><link href="https://coffee19850519.github.io/" rel="alternate" type="text/html" /><updated>2026-01-14T16:52:15+00:00</updated><id>https://coffee19850519.github.io/feed.xml</id><title type="html">Fei He’s Personal Homepage</title><subtitle>personal description</subtitle><author><name>Fei He</name><email>hefe@umsystem.edu</email><uri></uri></author><entry><title type="html">scPEFT was published in Nature Machine Intelligence</title><link href="https://coffee19850519.github.io/posts/2025/12/Paper%20published" rel="alternate" type="text/html" title="scPEFT was published in Nature Machine Intelligence" /><published>2025-12-31T00:00:00+00:00</published><updated>2025-12-31T00:00:00+00:00</updated><id>https://coffee19850519.github.io/posts/2025/12/NMI%20paper%20is%20published</id><content type="html" xml:base="https://coffee19850519.github.io/posts/2025/12/Paper%20published"><![CDATA[<p>Our paper titled “Harnessing the Power of Single Cell Large Language Models with Parameter-Efficient Fine-Tuning Using scPEFT” is finally out in <em><strong>Nature Machine Intelligence</strong></em>!
I would like to thank all co-authors for their contributions to this work.
Check it out at <a href="https://doi.org/10.1038/s42256-025-01170-z">link</a></p>]]></content><author><name>Fei He</name><email>hefe@umsystem.edu</email></author><category term="scPEFT" /><category term="Nature Machine Intelligence" /><summary type="html"><![CDATA[Our paper titled “Harnessing the Power of Single Cell Large Language Models with Parameter-Efficient Fine-Tuning Using scPEFT” is finally out in Nature Machine Intelligence! I would like to thank all co-authors for their contributions to this work. Check it out at link]]></summary></entry><entry><title type="html">scPEFT was accepted in Nature Machine Intelligence</title><link href="https://coffee19850519.github.io/posts/2025/11/Paper%20accepted" rel="alternate" type="text/html" title="scPEFT was accepted in Nature Machine Intelligence" /><published>2025-11-12T00:00:00+00:00</published><updated>2025-11-12T00:00:00+00:00</updated><id>https://coffee19850519.github.io/posts/2025/11/NMI%20paper%20accepted</id><content type="html" xml:base="https://coffee19850519.github.io/posts/2025/11/Paper%20accepted"><![CDATA[<p>I am thrilled to share that our paper titled “Harnessing the Power of Single Cell Large Language Models with Parameter-Efficient Fine-Tuning Using scPEFT” has been accepted for publication in <em><strong>Nature Machine Intelligence</strong></em>!</p>]]></content><author><name>Fei He</name><email>hefe@umsystem.edu</email></author><category term="scPEFT" /><category term="Nature Machine Intelligence" /><summary type="html"><![CDATA[I am thrilled to share that our paper titled “Harnessing the Power of Single Cell Large Language Models with Parameter-Efficient Fine-Tuning Using scPEFT” has been accepted for publication in Nature Machine Intelligence!]]></summary></entry><entry><title type="html">Invited talk to SIMIS</title><link href="https://coffee19850519.github.io/posts/2025/06/Invited%20Talk" rel="alternate" type="text/html" title="Invited talk to SIMIS" /><published>2025-06-10T00:00:00+00:00</published><updated>2025-06-10T00:00:00+00:00</updated><id>https://coffee19850519.github.io/posts/2025/06/invited%20talk%20to%20SIMIS</id><content type="html" xml:base="https://coffee19850519.github.io/posts/2025/06/Invited%20Talk"><![CDATA[<p>I just gave a talk about deep learning methods in single cell analyses to <a href="https://www.simis.cn/zh_cn/">Shanghai Institute for Mathematics and Interdisciplinary Sciences</a></p>

<p><img src="/images/SIMIS_talk.jpg" alt="poster" /></p>]]></content><author><name>Fei He</name><email>hefe@umsystem.edu</email></author><category term="Talk" /><category term="SIMIS" /><summary type="html"><![CDATA[I just gave a talk about deep learning methods in single cell analyses to Shanghai Institute for Mathematics and Interdisciplinary Sciences]]></summary></entry><entry><title type="html">Honored to receive the Outstanding PhD Award</title><link href="https://coffee19850519.github.io/posts/2025/05/Outstanding%20PhD%20winner" rel="alternate" type="text/html" title="Honored to receive the Outstanding PhD Award" /><published>2025-05-06T00:00:00+00:00</published><updated>2025-05-06T00:00:00+00:00</updated><id>https://coffee19850519.github.io/posts/2025/05/Outstanding%20PhD%20winner</id><content type="html" xml:base="https://coffee19850519.github.io/posts/2025/05/Outstanding%20PhD%20winner"><![CDATA[<ul>
  <li>
    <p>Thrilled to receive this year’s Outstanding PhD Student Award in EECS at MU!</p>
  </li>
  <li>
    <p>Grateful to share this honor with my advisor, <a href="https://engineering.missouri.edu/faculty/dong-xu/">Prof. Dong Xu</a>, and all my incredible collaborators.</p>
  </li>
</ul>

<p><img src="/images/outstanding_phd_award.jpg" alt="outstanding_phd_award" /></p>]]></content><author><name>Fei He</name><email>hefe@umsystem.edu</email></author><category term="Winner" /><category term="Outstanding PhD Award" /><summary type="html"><![CDATA[Thrilled to receive this year’s Outstanding PhD Student Award in EECS at MU!]]></summary></entry><entry><title type="html">Outstanding PhD nomination</title><link href="https://coffee19850519.github.io/posts/2025/04/Outstanding%20PhD%20nomination" rel="alternate" type="text/html" title="Outstanding PhD nomination" /><published>2025-04-25T00:00:00+00:00</published><updated>2025-04-25T00:00:00+00:00</updated><id>https://coffee19850519.github.io/posts/2025/04/Outstanding%20PhD%20nomination</id><content type="html" xml:base="https://coffee19850519.github.io/posts/2025/04/Outstanding%20PhD%20nomination"><![CDATA[<p>I am delighted to be nominated as a candidate for Outstanding PhD Student in EECS at MU! 
The winner will be announced in early May.</p>]]></content><author><name>Fei He</name><email>hefe@umsystem.edu</email></author><category term="Nomination" /><category term="Outstanding PhD Award" /><summary type="html"><![CDATA[I am delighted to be nominated as a candidate for Outstanding PhD Student in EECS at MU! The winner will be announced in early May.]]></summary></entry><entry><title type="html">Upcoming Role</title><link href="https://coffee19850519.github.io/posts/2025/04/Upcoming%20Role" rel="alternate" type="text/html" title="Upcoming Role" /><published>2025-04-24T00:00:00+00:00</published><updated>2025-04-24T00:00:00+00:00</updated><id>https://coffee19850519.github.io/posts/2025/04/Upcoming%20Role</id><content type="html" xml:base="https://coffee19850519.github.io/posts/2025/04/Upcoming%20Role"><![CDATA[<p>I am happy to accept the summer internship from <a href="https://www.stowers.org/">Stower Institute</a> to work in <a href="https://www.stowers.org/technology-centers/computational-biology">Computational Biology group</a>.
My role will involve surveying recent advancements in single cell Large Language Models and deep learning models across downstream tasks and datasets.</p>]]></content><author><name>Fei He</name><email>hefe@umsystem.edu</email></author><category term="Internship" /><category term="Summer Program" /><summary type="html"><![CDATA[I am happy to accept the summer internship from Stower Institute to work in Computational Biology group. My role will involve surveying recent advancements in single cell Large Language Models and deep learning models across downstream tasks and datasets.]]></summary></entry></feed>